PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594209.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 251aa    MW: 28021.6 Da    PI: 8.1461
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-172572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde+lv  +k+ G g+W++ +++ g++R++k+c++rw +yl
   XP_013594209.1 25 RGPWTAEEDEILVSFIKKEGEGRWRSLPKRAGLHRCGKSCRLRWMNYL 72
                     89********************************************97 PP

2Myb_DNA-binding50.93.5e-1679123248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g  T++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_013594209.1  79 GGITPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123
                      667******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-231675IPR009057Homeodomain-like
PROSITE profilePS5129418.0652072IPR017930Myb domain
SuperFamilySSF466891.54E-3021119IPR009057Homeodomain-like
SMARTSM007171.9E-142474IPR001005SANT/Myb domain
PfamPF002492.8E-152572IPR001005SANT/Myb domain
CDDcd001677.08E-122772No hitNo description
PROSITE profilePS5129424.93973127IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2576127IPR009057Homeodomain-like
SMARTSM007171.7E-1577125IPR001005SANT/Myb domain
PfamPF002496.6E-1579123IPR001005SANT/Myb domain
CDDcd001671.94E-1282123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MTSSGGKKQV VKKMIPCCMK MGMKRGPWTA EEDEILVSFI KKEGEGRWRS LPKRAGLHRC  60
GKSCRLRWMN YLRPSVKRGG ITPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN  120
THLRKKLLSE GIDPQTHKPL DAKNAHHKPG EEVSGGQNLL EPNSSSHTDD TTVNSGNEAS  180
KITFSVFGGE DNEDFGFCYD DKFSSFLNAL INDDPSDSNI PLSQPLRTQD CTGAIAGTSS  240
SLEHGQKLED I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27231275108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594209.10.0PREDICTED: transcription repressor MYB5-like
SwissprotQ388501e-137MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A0D3ADY90.0A0A0D3ADY9_BRAOL; Uncharacterized protein
STRINGBra039395.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-138myb domain protein 5